## Using CANARY as id variables
## Warning in wilcox.test.default(c(0.049, 0.115, 0.23, 0.315, 0.322, 0.274, :
## cannot compute exact p-value with ties
## Using Stages_simplified as id variables
## Using Hist_predominant as id variables
## Using Death_st as id variables
## Using Recurrence_st as id variables
## Using Progression_st as id variables
## Using Smoking_Status as id variables
| pt_ID | SILA | CANARY | Stages_simplified | X8th_ed_path_stage | Hist_predominant | Hist_other_patterns | Death_st | Recurrence_st | Progression_st | |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 7984 | 0.049 | G | Stage I | Stage IA1 | solid | acinar, lepidic | No | Yes | Yes |
| 54 | 13634 | 0.250 | G | Stage III | Stage IIIB | solid | NA | No | No | No |
| 78 | 14958 | 0.148 | G | Stage I | Stage IB | solid | acinar | No | No | No |
| 9 | 11652 | 0.479 | I | Stage I | Stage IA1 | papillary | micropapillary | No | Yes | No |
| 10 | 11728 | 0.408 | I | Stage I | Stage IA2 | micropapillary | acinar, solid | No | No | No |
| 21 | 11918 | 0.360 | I | Stage I | Stage IA1 | solid | acinar, lepidic | No | No | No |
| 28 | 12546 | 0.476 | I | Stage I | Stage IA1 | papillary | acinar | Yes | No | No |
| 36 | 12935 | 0.441 | I | Stage IV | Stage IV | solid | NA | Yes | No | Yes |
| 26 | 12281 | 0.340 | P | Stage I | Stage IA2 | acinar | lepidic, micropapillary | No | No | No |
| pt_ID | SILA | CANARY | Stages_simplified | X8th_ed_path_stage | Hist_predominant | Hist_other_patterns | Death_st | Recurrence_st | Progression_st | |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 7984 | 0.049 | G | Stage I | Stage IA1 | solid | acinar, lepidic | No | Yes | Yes |
| 2 | 8356 | 0.115 | G | Stage 0 | Stage 0 | lepidic | NA | No | No | No |
| 4 | 11522 | 0.230 | G | Stage I | Stage IA3 | acinar | lepidic | No | No | No |
| 9 | 11652 | 0.479 | I | Stage I | Stage IA1 | papillary | micropapillary | No | Yes | No |
| 10 | 11728 | 0.408 | I | Stage I | Stage IA2 | micropapillary | acinar, solid | No | No | No |
| 16 | 11851 | 0.428 | I | Stage I | Stage IB | acinar | NA | No | No | No |
| 18 | 11886 | 0.315 | G | Stage I | Stage IB | acinar | solid | No | No | No |
| 21 | 11918 | 0.360 | I | Stage I | Stage IA1 | solid | acinar, lepidic | No | No | No |
| 22 | 11938 | 0.417 | I | Stage I | Stage IB | acinar | lepidic | No | No | No |
| 26 | 12281 | 0.340 | P | Stage I | Stage IA2 | acinar | lepidic, micropapillary | No | No | No |
| 28 | 12546 | 0.476 | I | Stage I | Stage IA1 | papillary | acinar | Yes | No | No |
| 31 | 12911 | 0.322 | G | Stage I | Stage IA2 | acinar | micropapillary, lepidic | No | No | No |
| 32 | 12915 | 0.435 | I | Stage I | Stage IB | acinar | lepidic | No | No | No |
| 36 | 12935 | 0.441 | I | Stage IV | Stage IV | solid | NA | Yes | No | Yes |
| 40 | 13055 | 0.418 | I | Stage I | Stage IA3 | acinar | micropapillary | No | No | No |
| 45 | 13276 | 0.459 | I | Stage I | Stage IA2 | acinar | micropapillary | No | No | No |
| 48 | 13376 | 0.274 | G | Stage I | Stage IB | lepidic | acinar | No | No | No |
| 51 | 13538 | 0.368 | I | Stage I | Stage IA1 | papillary | lepidic | No | No | No |
| 54 | 13634 | 0.250 | G | Stage III | Stage IIIB | solid | NA | No | No | No |
| 63 | 13922 | 0.359 | I | Stage II | Stage IIB | acinar | solid | No | No | No |
| 66 | 14201 | 0.416 | I | Stage I | Stage IA2 | acinar | lepidic | No | No | No |
| 69 | 14428 | 0.493 | I | Stage I | Stage IA2 | acinar | micropapillary, lepidic | No | No | No |
| 72 | 14825 | 0.418 | I | Stage II | Stage IIB | acinar | micropapillary | No | No | No |
| 78 | 14958 | 0.148 | G | Stage I | Stage IB | solid | acinar | No | No | No |
| 80 | 14965 | 0.350 | G | Stage I | Stage IA3 | acinar | lepidic | No | No | No |
| 83 | 15083 | 0.421 | I | Stage I | Stage IA2 | acinar | micropapillary, lepidic | No | No | No |
| 92 | 15641 | 0.380 | I | Stage II | Stage IIB | acinar | solid, micropapillary | No | No | No |
| 93 | 15741 | 0.405 | I | Stage I | Stage IA2 | acinar | lepidic | No | No | No |
| pt_ID | SILA | CANARY | Stages_simplified | X8th_ed_path_stage | Hist_predominant | Hist_other_patterns | Death_st | Recurrence_st | Progression_st | |
|---|---|---|---|---|---|---|---|---|---|---|
| 3 | 11424 | 0.750 | P | Stage I | Stage IA3 | solid | NA | No | No | No |
| 5 | 11538 | 0.758 | P | Stage I | Stage IB | micropapillary | NA | No | Yes | No |
| 6 | 11561 | 0.555 | P | Stage I | Stage IA3 | papillary | acinar, micropapillary | No | No | No |
| 7 | 11601 | 0.610 | P | Stage I | Stage IA1 | solid | acinar | No | No | No |
| 8 | 11646 | 0.695 | P | Stage I | Stage IA2 | micropapillary | solid, acinar | No | No | No |
| 11 | 11759 | 0.634 | P | Stage I | Stage IA2 | acinar | micropapillary | No | No | No |
| 12 | 11813 | 0.547 | P | Stage I | Stage IA2 | acinar | lepidic | No | No | No |
| 13 | 11817 | 0.797 | P | Stage II | Stage IIB | acinar | solid | Yes | Yes | Yes |
| 14 | 11820 | 0.665 | P | Stage I | Stage IA1 | acinar | solid | No | No | No |
| 15 | 11840 | 0.596 | P | Stage I | Stage IA3 | solid | acinar | No | Yes | Yes |
| 17 | 11855 | 0.761 | P | Stage I | Stage IA3 | acinar | NA | No | No | No |
| 19 | 11901 | 0.647 | P | Stage I | Stage IA3 | acinar | solid | Yes | No | No |
| 20 | 11906 | 0.505 | I | Stage I | Stage IA2 | acinar | lepidic | No | No | No |
| 23 | 11952 | 0.822 | P | Stage I | Stage IA3 | acinar | NA | No | No | No |
| 24 | 11957 | 0.712 | P | Stage III | Stage IIIA | acinar | solid | Yes | No | No |
| 25 | 12177 | 0.649 | P | Stage III | Stage IIIA | acinar | solid | Yes | No | Yes |
| 27 | 12323 | 0.794 | P | Stage III | Stage IIIA | acinar | micropapillary | No | No | No |
| 29 | 12889 | 0.768 | P | Stage II | Stage IIB | solid | NA | No | No | No |
| 30 | 12890 | 0.791 | P | Stage II | Stage IIA | acinar | micropapillary | Yes | No | Yes |
| 33 | 12924 | 0.669 | P | Stage II | Stage IIB | papillary | acinar | Yes | Yes | No |
| 34 | 12929 | 0.622 | P | Stage II | Stage IIB | acinar | lepidic | Yes | No | Yes |
| 35 | 12931 | 0.790 | P | Stage II | Stage IIA | solid | acinar | No | No | No |
| 37 | 12994 | 0.750 | P | Stage III | Stage IIIB | micropapillary | acinar | Yes | No | Yes |
| 38 | 13014 | 0.735 | P | Stage II | Stage IIA | acinar | micropapillary | No | No | No |
| 39 | 13034 | 0.551 | P | Stage I | Stage IB | micropapillary | acinar | No | No | Yes |
| 41 | 13074 | 0.742 | P | Stage I | Stage IA2 | solid | acinar | Yes | No | Yes |
| 42 | 13155 | 0.731 | P | Stage I | Stage IA3 | acinar | micropappilary | No | No | No |
| 43 | 13197 | 0.697 | P | Stage II | Stage IIB | acinar | micropapillary | No | No | No |
| 44 | 13207 | 0.675 | P | Stage I | Stage IA3 | micropapillary | NA | No | No | No |
| 46 | 13317 | 0.697 | P | Stage I | Stage IA3 | micropapillary | solid | No | No | No |
| 47 | 13356 | 0.621 | P | Stage II | Stage IIB | acinar | solid | Yes | No | No |
| 49 | 13436 | 0.739 | P | Stage II | Stage IIB | acinar | NA | No | No | No |
| 50 | 13536 | 0.502 | I | Stage I | Stage IA2 | acinar | NA | No | No | No |
| 52 | 13579 | 0.664 | P | Stage II | Stage IIB | acinar | NA | No | No | No |
| 53 | 13622 | 0.799 | P | Stage II | Stage IIA | solid | NA | No | No | No |
| 55 | 13636 | 0.853 | P | Stage III | Stage IIIA | papillary | NA | No | No | No |
| 56 | 13651 | 0.548 | P | Stage III | Stage IIIA | acinar | lepidic | No | No | No |
| 57 | 13724 | 0.789 | P | Stage II | Stage IIA | solid | acinar | No | Yes | Yes |
| 58 | 13746 | 0.821 | P | Stage IV | Stage IV | acinar | NA | No | No | Yes |
| 59 | 13769 | 0.699 | P | Stage II | Stage IIA | acinar | lepidic | No | No | No |
| 60 | 13771 | 0.554 | P | Stage I | Stage IA3 | papillary | acinar | No | No | No |
| 61 | 13774 | 0.735 | P | Stage I | Stage IA3 | acinar | papillary | Yes | Yes | Yes |
| 62 | 13801 | 0.705 | P | Stage I | Stage IA2 | acinar | NA | Yes | No | No |
| 64 | 13988 | 0.575 | P | Stage II | Stage IIA | acinar | NA | No | No | No |
| 65 | 14048 | 0.774 | P | Stage I | Stage IB | acinar | NA | Yes | No | No |
| 67 | 14301 | 0.826 | P | Stage II | Stage IIB | micropapillary | solid, acinar | No | No | No |
| 68 | 14330 | 0.732 | P | Stage II | Stage IIA | acinar | lepidc | No | No | No |
| 70 | 14610 | 0.758 | P | Stage II | Stage IIA | mucinous acinar | lepidic | No | No | No |
| 71 | 14813 | 0.627 | P | Stage I | Stage IA2 | solid | acinar, lepidic | No | No | No |
| 73 | 14836 | 0.773 | P | Stage I | Stage IA3 | solid | acinar | No | No | No |
| 74 | 14855 | 0.513 | I | Stage I | Stage IB | acinar | micropapillary | No | No | No |
| 75 | 14933 | 0.599 | P | Stage I | Stage IA3 | acinar | micropapillary | No | Yes | No |
| 76 | 14953 | 0.821 | P | Stage II | Stage IIA | solid | NA | No | No | No |
| 77 | 14955 | 0.560 | P | Stage II | Stage IIB | solid | acinar | No | No | No |
| 79 | 14962 | 0.721 | P | Stage II | Stage IIB | papillary | acinar | No | No | No |
| 81 | 15001 | 0.532 | I | Stage I | Stage IB | micropapillary | acinar | No | No | No |
| 82 | 15002 | 0.724 | P | Stage II | Stage IIA | solid | NA | No | No | No |
| 84 | 15187 | 0.616 | P | Stage I | Stage IA2 | acinar | lepidic | No | No | No |
| 85 | 15224 | 0.716 | P | Stage I | Stage IA2 | acinar | papillary, micropapillary | No | No | No |
| 86 | 15325 | 0.622 | P | Stage I | Stage IA1 | papillary | NA | No | No | No |
| 87 | 15326 | 0.612 | P | Stage I | Stage IA3 | acinar | micropapillary | No | No | No |
| 88 | 15467 | 0.699 | P | Stage I | Stage IA3 | mucinous acinar | NA | No | No | No |
| 89 | 15506 | 0.777 | P | Stage II | Stage IIA | mucinous acinar | NA | No | No | No |
| 90 | 15569 | 0.687 | P | Stage II | Stage IIA | acinar | solid | No | No | No |
| 91 | 15626 | 0.699 | P | Stage II | Stage IIB | acinar | micropapilary, papillary, lepidic | No | No | Yes |
| pt_ID | SILA | CANARY | Stages_simplified | X8th_ed_path_stage | Hist_predominant | Hist_other_patterns | Death_st | Recurrence_st | Progression_st | |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 7984 | 0.049 | G | Stage I | Stage IA1 | solid | acinar, lepidic | No | Yes | Yes |
| 2 | 8356 | 0.115 | G | Stage 0 | Stage 0 | lepidic | NA | No | No | No |
| 4 | 11522 | 0.230 | G | Stage I | Stage IA3 | acinar | lepidic | No | No | No |
| 18 | 11886 | 0.315 | G | Stage I | Stage IB | acinar | solid | No | No | No |
| 21 | 11918 | 0.360 | I | Stage I | Stage IA1 | solid | acinar, lepidic | No | No | No |
| 26 | 12281 | 0.340 | P | Stage I | Stage IA2 | acinar | lepidic, micropapillary | No | No | No |
| 31 | 12911 | 0.322 | G | Stage I | Stage IA2 | acinar | micropapillary, lepidic | No | No | No |
| 48 | 13376 | 0.274 | G | Stage I | Stage IB | lepidic | acinar | No | No | No |
| 51 | 13538 | 0.368 | I | Stage I | Stage IA1 | papillary | lepidic | No | No | No |
| 54 | 13634 | 0.250 | G | Stage III | Stage IIIB | solid | NA | No | No | No |
| 63 | 13922 | 0.359 | I | Stage II | Stage IIB | acinar | solid | No | No | No |
| 78 | 14958 | 0.148 | G | Stage I | Stage IB | solid | acinar | No | No | No |
| 80 | 14965 | 0.350 | G | Stage I | Stage IA3 | acinar | lepidic | No | No | No |
| 92 | 15641 | 0.380 | I | Stage II | Stage IIB | acinar | solid, micropapillary | No | No | No |
| pt_ID | SILA | CANARY | Stages_simplified | X8th_ed_path_stage | Hist_predominant | Hist_other_patterns | Death_st | Recurrence_st | Progression_st | |
|---|---|---|---|---|---|---|---|---|---|---|
| 6 | 11561 | 0.555 | P | Stage I | Stage IA3 | papillary | acinar, micropapillary | No | No | No |
| 9 | 11652 | 0.479 | I | Stage I | Stage IA1 | papillary | micropapillary | No | Yes | No |
| 10 | 11728 | 0.408 | I | Stage I | Stage IA2 | micropapillary | acinar, solid | No | No | No |
| 12 | 11813 | 0.547 | P | Stage I | Stage IA2 | acinar | lepidic | No | No | No |
| 15 | 11840 | 0.596 | P | Stage I | Stage IA3 | solid | acinar | No | Yes | Yes |
| 16 | 11851 | 0.428 | I | Stage I | Stage IB | acinar | NA | No | No | No |
| 20 | 11906 | 0.505 | I | Stage I | Stage IA2 | acinar | lepidic | No | No | No |
| 22 | 11938 | 0.417 | I | Stage I | Stage IB | acinar | lepidic | No | No | No |
| 28 | 12546 | 0.476 | I | Stage I | Stage IA1 | papillary | acinar | Yes | No | No |
| 32 | 12915 | 0.435 | I | Stage I | Stage IB | acinar | lepidic | No | No | No |
| 36 | 12935 | 0.441 | I | Stage IV | Stage IV | solid | NA | Yes | No | Yes |
| 39 | 13034 | 0.551 | P | Stage I | Stage IB | micropapillary | acinar | No | No | Yes |
| 40 | 13055 | 0.418 | I | Stage I | Stage IA3 | acinar | micropapillary | No | No | No |
| 45 | 13276 | 0.459 | I | Stage I | Stage IA2 | acinar | micropapillary | No | No | No |
| 50 | 13536 | 0.502 | I | Stage I | Stage IA2 | acinar | NA | No | No | No |
| 56 | 13651 | 0.548 | P | Stage III | Stage IIIA | acinar | lepidic | No | No | No |
| 60 | 13771 | 0.554 | P | Stage I | Stage IA3 | papillary | acinar | No | No | No |
| 64 | 13988 | 0.575 | P | Stage II | Stage IIA | acinar | NA | No | No | No |
| 66 | 14201 | 0.416 | I | Stage I | Stage IA2 | acinar | lepidic | No | No | No |
| 69 | 14428 | 0.493 | I | Stage I | Stage IA2 | acinar | micropapillary, lepidic | No | No | No |
| 72 | 14825 | 0.418 | I | Stage II | Stage IIB | acinar | micropapillary | No | No | No |
| 74 | 14855 | 0.513 | I | Stage I | Stage IB | acinar | micropapillary | No | No | No |
| 75 | 14933 | 0.599 | P | Stage I | Stage IA3 | acinar | micropapillary | No | Yes | No |
| 77 | 14955 | 0.560 | P | Stage II | Stage IIB | solid | acinar | No | No | No |
| 81 | 15001 | 0.532 | I | Stage I | Stage IB | micropapillary | acinar | No | No | No |
| 83 | 15083 | 0.421 | I | Stage I | Stage IA2 | acinar | micropapillary, lepidic | No | No | No |
| 93 | 15741 | 0.405 | I | Stage I | Stage IA2 | acinar | lepidic | No | No | No |
| pt_ID | SILA | CANARY | Stages_simplified | X8th_ed_path_stage | Hist_predominant | Hist_other_patterns | Death_st | Recurrence_st | Progression_st | |
|---|---|---|---|---|---|---|---|---|---|---|
| 3 | 11424 | 0.750 | P | Stage I | Stage IA3 | solid | NA | No | No | No |
| 5 | 11538 | 0.758 | P | Stage I | Stage IB | micropapillary | NA | No | Yes | No |
| 7 | 11601 | 0.610 | P | Stage I | Stage IA1 | solid | acinar | No | No | No |
| 8 | 11646 | 0.695 | P | Stage I | Stage IA2 | micropapillary | solid, acinar | No | No | No |
| 11 | 11759 | 0.634 | P | Stage I | Stage IA2 | acinar | micropapillary | No | No | No |
| 13 | 11817 | 0.797 | P | Stage II | Stage IIB | acinar | solid | Yes | Yes | Yes |
| 14 | 11820 | 0.665 | P | Stage I | Stage IA1 | acinar | solid | No | No | No |
| 17 | 11855 | 0.761 | P | Stage I | Stage IA3 | acinar | NA | No | No | No |
| 19 | 11901 | 0.647 | P | Stage I | Stage IA3 | acinar | solid | Yes | No | No |
| 23 | 11952 | 0.822 | P | Stage I | Stage IA3 | acinar | NA | No | No | No |
| 24 | 11957 | 0.712 | P | Stage III | Stage IIIA | acinar | solid | Yes | No | No |
| 25 | 12177 | 0.649 | P | Stage III | Stage IIIA | acinar | solid | Yes | No | Yes |
| 27 | 12323 | 0.794 | P | Stage III | Stage IIIA | acinar | micropapillary | No | No | No |
| 29 | 12889 | 0.768 | P | Stage II | Stage IIB | solid | NA | No | No | No |
| 30 | 12890 | 0.791 | P | Stage II | Stage IIA | acinar | micropapillary | Yes | No | Yes |
| 33 | 12924 | 0.669 | P | Stage II | Stage IIB | papillary | acinar | Yes | Yes | No |
| 34 | 12929 | 0.622 | P | Stage II | Stage IIB | acinar | lepidic | Yes | No | Yes |
| 35 | 12931 | 0.790 | P | Stage II | Stage IIA | solid | acinar | No | No | No |
| 37 | 12994 | 0.750 | P | Stage III | Stage IIIB | micropapillary | acinar | Yes | No | Yes |
| 38 | 13014 | 0.735 | P | Stage II | Stage IIA | acinar | micropapillary | No | No | No |
| 41 | 13074 | 0.742 | P | Stage I | Stage IA2 | solid | acinar | Yes | No | Yes |
| 42 | 13155 | 0.731 | P | Stage I | Stage IA3 | acinar | micropappilary | No | No | No |
| 43 | 13197 | 0.697 | P | Stage II | Stage IIB | acinar | micropapillary | No | No | No |
| 44 | 13207 | 0.675 | P | Stage I | Stage IA3 | micropapillary | NA | No | No | No |
| 46 | 13317 | 0.697 | P | Stage I | Stage IA3 | micropapillary | solid | No | No | No |
| 47 | 13356 | 0.621 | P | Stage II | Stage IIB | acinar | solid | Yes | No | No |
| 49 | 13436 | 0.739 | P | Stage II | Stage IIB | acinar | NA | No | No | No |
| 52 | 13579 | 0.664 | P | Stage II | Stage IIB | acinar | NA | No | No | No |
| 53 | 13622 | 0.799 | P | Stage II | Stage IIA | solid | NA | No | No | No |
| 55 | 13636 | 0.853 | P | Stage III | Stage IIIA | papillary | NA | No | No | No |
| 57 | 13724 | 0.789 | P | Stage II | Stage IIA | solid | acinar | No | Yes | Yes |
| 58 | 13746 | 0.821 | P | Stage IV | Stage IV | acinar | NA | No | No | Yes |
| 59 | 13769 | 0.699 | P | Stage II | Stage IIA | acinar | lepidic | No | No | No |
| 61 | 13774 | 0.735 | P | Stage I | Stage IA3 | acinar | papillary | Yes | Yes | Yes |
| 62 | 13801 | 0.705 | P | Stage I | Stage IA2 | acinar | NA | Yes | No | No |
| 65 | 14048 | 0.774 | P | Stage I | Stage IB | acinar | NA | Yes | No | No |
| 67 | 14301 | 0.826 | P | Stage II | Stage IIB | micropapillary | solid, acinar | No | No | No |
| 68 | 14330 | 0.732 | P | Stage II | Stage IIA | acinar | lepidc | No | No | No |
| 70 | 14610 | 0.758 | P | Stage II | Stage IIA | mucinous acinar | lepidic | No | No | No |
| 71 | 14813 | 0.627 | P | Stage I | Stage IA2 | solid | acinar, lepidic | No | No | No |
| 73 | 14836 | 0.773 | P | Stage I | Stage IA3 | solid | acinar | No | No | No |
| 76 | 14953 | 0.821 | P | Stage II | Stage IIA | solid | NA | No | No | No |
| 79 | 14962 | 0.721 | P | Stage II | Stage IIB | papillary | acinar | No | No | No |
| 82 | 15002 | 0.724 | P | Stage II | Stage IIA | solid | NA | No | No | No |
| 84 | 15187 | 0.616 | P | Stage I | Stage IA2 | acinar | lepidic | No | No | No |
| 85 | 15224 | 0.716 | P | Stage I | Stage IA2 | acinar | papillary, micropapillary | No | No | No |
| 86 | 15325 | 0.622 | P | Stage I | Stage IA1 | papillary | NA | No | No | No |
| 87 | 15326 | 0.612 | P | Stage I | Stage IA3 | acinar | micropapillary | No | No | No |
| 88 | 15467 | 0.699 | P | Stage I | Stage IA3 | mucinous acinar | NA | No | No | No |
| 89 | 15506 | 0.777 | P | Stage II | Stage IIA | mucinous acinar | NA | No | No | No |
| 90 | 15569 | 0.687 | P | Stage II | Stage IIA | acinar | solid | No | No | No |
| 91 | 15626 | 0.699 | P | Stage II | Stage IIB | acinar | micropapilary, papillary, lepidic | No | No | Yes |
## Using n_op1 as id variables
## Using n_op2 as id variables
## Warning in wilcox.test.default(c(0.049, 0.115, 0.23, 0.315, 0.36, 0.34, : cannot
## compute exact p-value with ties